_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-70
 Query name: gi|589268202|emb|CCG28020.1| glutathione peroxidase 1b1 [Oncorhynchus mykiss]
 Query range: 1-189  (total 189)

 Target: /data/www-rg/seblastian_results/379389237/tempfiles/temptarget.fasta
 Chromosome: CM007951.1:subseq_45415011,100956_ Strand: +
 Positions:
 -Exon 1  50000        50218
 -Exon 2  50621        50968

 Redox box: no

Query   MSGSEFYNMTAKLISGDFFKFSSLGGKVVLIENVASLUGTTTRDYTQMNELHERYADKGLVILGVPCNQFGHQ <---Intron---> ENCNNEEILMS
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   402bp    > |||||||||||
Target  MSGSEFYNMTAKLISGDFFKFSSLGGKVVLIENVASLUGTTTRDYTQMNELHERYADKGLVILGVPCNQFGHQ                ENCNNEEILMS
        atgagttaaagacatggttatttcggaggcagaggtctgaaaagtacaagccgctggagcgacggctactgcc                gataaggacat
        tcggataatccattcgattatcctggattttaatcctggcccgaacataataagacaagttttgtcgaatgaa                aagaaaatttc
        gtatgcccgcaactaatttacgatctagggcgtggtcattccgtccggcgctagcccgtcgtgggcctacatg                gcctcagtggc
                                             *                                                              

Query   LKYVRPGNGFEPNFQLLEKVDVNGKHAHPLFVYLKEKLQFPSDDPMALMNDPKCIIWSPVGRNDIAWNFEKFLIGPDGEPFKRYSRRFPTIDIEGDIKKL
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LKYVRPGNGFEPNFQLLEKVDVNGKHAHPLFVYLKEKLQFPSDDPMALMNDPKCIIWSPVGRNDIAWNFEKFLIGPDGEPFKRYSRRFPTIDIEGDIKKL
        tatgccgagtgcatcccgagggagacgccctgtcagacctcaggcagtaagcataatacggaagagtatgatcagcgggctactaaatcaagagggaaac
        taatgcgagtacatattaatatagaacactttataaatatcgaactcttaacagttggctggaatcgataatttgcagactagagggtcctatagataat
        ggtcagatctgctcgctgagtgcggccccgtgccgggggcacttcgcagcctatccgtctcgtcccgctggtccgacagacacccgacgccctgtccggt
                                                                                                            

Query   LNTAN
        |||||
Target  LNTAN
        caaga
        tacca
        tcgac
             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 255 ; UGA-SECIS: 708

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007951.1:subseq_45415011,100956_ Strand = + Positions = 51224 - 51297
 Found by:  Infernal (score=33.4) Covels (score=25.64)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -12.21

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((((((((---....{[[(({{(((((((...................)))))))}}))]]}..--..-.)))))))).
 target  AACUUUUAU---UAAAUGAAGCCAUCCUUUGAAACCACGCCUUUUGUGAGGGGGAUAUCUGAUGA--AA-UAUAAAAGUC
                         ****           ^^^                         ****